Follow my journey as an RNA biologist. I share lessons learned on how to make research more enjoyable and productive. I give tips about life in academia, bioinformatics, and the occasional post about the research from my laboratory.
Hi Marco. I am totally new to snakemake and I am finding your tutorials resourceful. I am, however, struggling to keep up with the background music. Could it possibly be lowered in future tutorials. Otherwise, great work. Also, do you have something on the use of "expand" with wildcards?
Hi Timothy, I am glad you are finding the tutorials helpful. Thanks for the feedback on the music. I will remove it at least for most of the videos in the future. Check the following video for "expand" with wildcards : ru-vid.com/video/%D0%B2%D0%B8%D0%B4%D0%B5%D0%BE-R-z49Oc32qU.html
Hi @muungani, I have never tried this with Quatro. Still, it is possible that it would work according to the following quote from the Quatro website: "Like R Markdown, Quarto uses knitr to execute R code and is therefore able to render most existing Rmd files without modification." Please let me know how it goes. Best, Marcos.
Hi. I was wondering how you're able to get snakemake on your Rstudio terminal? In my Rstudio I just see python code with >>> even though i loaded reticulate package. yours seems to have snakemake and then all output in green and yellow colors. How did you establish the python environment on R?
Hi, great question! The good news is that you do not need the reticulate package to open a terminal. You do not even need to be in a Python environment to run Snakemake. You can run Snakemake directly on your terminal. To open a terminal in RStudio, go to Code> Terminal > Open New Terminal at File Location. Let me know if you still need help.
Your channel is great. I wish more professors would share their experience as you do. I am trying to start a channel myself very much inspired by yours.
