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Base Excision Repair | DNA Repair Mechanism 

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The Base excision repair (BER) is a cellular mechanism that repairs damaged DNA throughout the cell cycle. It is responsible primarily for removing small, non-helix-distorting base lesions from the genome. The related nucleotide excision repair pathway repairs bulky helix-distorting lesions. BER is important for removing damaged bases that could otherwise cause mutations by mispairing or lead to breaks in DNA during replication. BER is initiated by DNA glycosylases, which recognize and remove specific damaged or inappropriate bases, forming AP sites. These are then cleaved by an AP endonuclease. The resulting single-strand break can then be processed by either short-patch (where a single nucleotide is replaced) or long-patch BER .
The Base Excision repair mechanism makes use of the following enzymes to repair the DNA :
DNA Glycosylase
AP Endonuclease
DNA Polymerase
DNA Ligase
The Base Excision Repair , is initiated by the damaged DNA due to chemicals and radiations.The Base Excision repair is a single strand repair mechanism where single base gets transformed into different base like in Hydrolytic Deamination where Cytosine changes into Uracil thereby changing the genetic code.
Single bases in DNA can be chemically damaged by a variety of mechanisms, the most common ones being deamination, oxidation, and alkylation. These modifications can affect the ability of the base to hydrogen-bond, resulting in incorrect base-pairing, and, as a consequence, mutations in the DNA. For example, incorporation of adenine across from 8-oxoguanine (right) during DNA replication causes a G:C base pair to be mutated to T:A. Other examples of base lesions repaired by BER include:
Oxidized bases: 8-oxoguanine, 2,6-diamino-4-hydroxy-5-formamidopyrimidine (FapyG, FapyA)
Alkylated bases: 3-methyladenine, 7-methylguanosine
Deaminated bases: hypoxanthine formed from deamination of adenine. Xanthine formed from deamination of guanine. (Thymidine products following deamination of 5-methylcytosine are more difficult to recognize, but can be repaired by mismatch-specific glycosylases)
Uracil inappropriately incorporated in DNA or formed by deamination of cytosine[2]
In addition to base lesions, the downstream steps of BER are also utilized to repair single-strand breaks.

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6 окт 2017

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Комментарии : 103   
@spicytuna08
@spicytuna08 Месяц назад
oh my God. i am from non-biology background. cannot believe our human has this jaw opening cellular dna mechanism. amazing how this was even discovered. thank you
@hussainbiology
@hussainbiology Месяц назад
glad to know that...
@Vinayak_Nair
@Vinayak_Nair 2 года назад
Thank you for this CLEAR explanation!
@yazanabandah1677
@yazanabandah1677 4 года назад
Ap Endonuclease cleaves the 5’ end .. and Lyase cleaves the 3’ end .. then DNA polymerase and DNA lygase play role. You forgot to mention the Lyase part! “Base-specific Glycosylase removes altered base and creates AP site (apurinic/apyrimidinic). One or more nucleotides are removed by AP-Endonuclease, which cleaves the 5′ end. Lyase cleaves the 3′ end. DNA Polymerase-β fills the gap and DNA Ligase seals it. Occurs throughout cell cycle.” GEL PLease! (The steps gylcosylase, endonuclease, lyase, polymerase, ligase) The quote is from FA USMLE step 1, biochemistry section (2 section), page 40.
@aussiejake4792
@aussiejake4792 2 года назад
excellent explantion! Thanks so much
@sofiaahnen5076
@sofiaahnen5076 Год назад
thank you! super helpful and clear!
@user-wh5df2cg2q
@user-wh5df2cg2q 4 года назад
very well done mate
@caterine4604
@caterine4604 5 лет назад
THANKS HUSSAINNN !!! YOU ARE THE BEST !
@hussainbiology
@hussainbiology 5 лет назад
Thanks Emila for appreciation...Glad to know that it helps.....
@user-xz5un7vq4m
@user-xz5un7vq4m 4 месяца назад
Thank you for this through explanation!
@vinitaantil396
@vinitaantil396 4 года назад
Great work ... Keep it up...
@smahi4479
@smahi4479 4 года назад
Always been a big fan of your work.... Can you please do a video on Nucleotide excision repair?
@melvin49
@melvin49 4 года назад
Good one . Thanks
@namratagupta207
@namratagupta207 3 года назад
Thanks for precise and clear explanation 🙏
@hussainbiology
@hussainbiology 3 года назад
You are welcome ✌️
@temgodwin4033
@temgodwin4033 2 года назад
great explanation
@merve_n
@merve_n 5 месяцев назад
Thank you so much!!
@debbiehariette6335
@debbiehariette6335 4 года назад
fantastic video, thank you :0)
@hussainbiology
@hussainbiology 4 года назад
you are welcome ✌️
@pranalitupare3661
@pranalitupare3661 5 лет назад
Amazingly explained
@hussainbiology
@hussainbiology 5 лет назад
Thanks Pranali for appreciation...Glad to know that it helps...
@kannankamal5446
@kannankamal5446 4 года назад
Video excellent bro,but voice is not clarity,make sure for that
@harshavardhini6359
@harshavardhini6359 Год назад
Superb explanation
@ayeshahameed2859
@ayeshahameed2859 6 лет назад
i just want you to know that all of your videos are awesome... keep it up... and help us by making more clear videos like that :)
@hussainbiology
@hussainbiology 6 лет назад
Glad to know that my work helps you and i really appreciate your words ........It really boosts my confidence ..... Thanks Ayesha 😊
@kushagarjuneja9996
@kushagarjuneja9996 5 лет назад
WONDERFUL!!
@hussainbiology
@hussainbiology 5 лет назад
Thanks dear for appreciation
@user-nx1kk5gi2w
@user-nx1kk5gi2w 2 месяца назад
T hank you
@keerthichandranchoutapalli5153
Your videos helps me a lot during my exams and makes easy to understand the topics short and very clear.. I really appreciates your hard work... Keep it up... Try to make videos in regarding to every concept in biology because some hard portions we are finding your videos... Once again thank you for your great work ✨
@hussainbiology
@hussainbiology Год назад
thanks for appreciating my work.... keep sharing
@rainbowchicklol123
@rainbowchicklol123 6 лет назад
This video is awesome!
@hussainbiology
@hussainbiology 6 лет назад
Thanks Sarah for appreciation.....Keep supporting 😊
@vishnuvish1647
@vishnuvish1647 2 года назад
Vedio was helpful
@ansari.zeba0748
@ansari.zeba0748 Год назад
U r doing great...keep it up
@hussainbiology
@hussainbiology Год назад
Thank you so much 😀
@a45sankhadiptoghosh64
@a45sankhadiptoghosh64 3 года назад
I learned that from your one previous video
@crisprcas3537
@crisprcas3537 5 лет назад
Thank u
@hussainbiology
@hussainbiology 5 лет назад
Thanks buddy for appreciation....
@hitkarshkushwaha2434
@hitkarshkushwaha2434 6 лет назад
good !
@hussainbiology
@hussainbiology 6 лет назад
Thanks Buddy....appreciate ur support
@Nishahappyhub
@Nishahappyhub Год назад
Thanku sir🥰
@hussainbiology
@hussainbiology Год назад
my pleasure... Glad it helps ✌️
@JS-hh9zs
@JS-hh9zs Год назад
One question though. How the DNA glycosylase know which base (in this case uracil), are the wrong uracil. After all, there are uracil also in immature mRNA. Why don't the glycosylase also cut the uracil from the right nucleotide? how it recognize the wrong uracil?
@a45sankhadiptoghosh64
@a45sankhadiptoghosh64 3 года назад
Because of methylated cytosine converts to thymine by removing amino group and adding one h2o molecule
@BKmansha
@BKmansha 5 лет назад
Nice nice very nice
@hussainbiology
@hussainbiology 5 лет назад
Thanks Mansha for appreciation...
@elahefa8433
@elahefa8433 8 месяцев назад
Do we have a short-patch and long-patch repair in prokaryots ? Is it kinda BER ?
@hussainbiology
@hussainbiology 8 месяцев назад
Yeah….it is kinda a BER
@MelomaniacEarth
@MelomaniacEarth 3 года назад
do you provide any notes in any ur website or in pdf format...it will be really helpful!!!
@hussainbiology
@hussainbiology 3 года назад
Apologies.. the website is not functional anymore and as of now I don't provide any notes
@MelomaniacEarth
@MelomaniacEarth 3 года назад
@@hussainbiology its fine sir...the video itself was informative 🙂
@yashusharma8781
@yashusharma8781 Год назад
Plz recombination repair topic pr video bnado sir..🙏🙏🙏
@hussainbiology
@hussainbiology Год назад
Haan jaldi
@beighmubashir4902
@beighmubashir4902 2 года назад
Today I got to know that u r from Kashmir...I was thinking that u r Pakistani,,...I am from lolab valley kupwara and I am studying outside state and your vedios has helped me a lot from previous few years....Love u bro and now I am much proud on myself that whatever I achieved, some credit goes to u also ....Love u man 😊...proud of uhh
@hussainbiology
@hussainbiology 2 года назад
Great 👍 first of all thanks buddy for appreciation .... and where from u got to know i am from Kashmir ?
@beighmubashir4902
@beighmubashir4902 2 года назад
@@hussainbiology comment sections se pata chala bhai ...thanks to you I almost topped my batch after watching your vedios ..
@bijayachettri8689
@bijayachettri8689 Год назад
Sir you've deleted video on nucleotide excision repair ??? It was in your channel and i couldn't find it ..will you let me know you deleted or its there???🥺
@hussainbiology
@hussainbiology Год назад
No no.. i don't think i have made a video on that topic..... Ya toa mai he bhool gaya hoon
@bibek8945
@bibek8945 3 года назад
You didn't clearly explain the work of Ap endonuclease. DNA glycosylase removed the base... And what did the Ap endonuclease do?
@FOODIESWITHAQSA
@FOODIESWITHAQSA 3 года назад
AP endonuclease cut phosphate sugar backbone and create a nick
@bibek8945
@bibek8945 3 года назад
@@FOODIESWITHAQSA now i get it... Tq
@srimanc.r9538
@srimanc.r9538 6 лет назад
replication, transcription and translation
@hemjoshi1724
@hemjoshi1724 6 лет назад
Sir u don't have nucleotide excision repair lecture video i need this
@hussainbiology
@hussainbiology 6 лет назад
Apologies.... I haven't made a video on that yet but i will definitely consider your suggestion .
@hemjoshi1724
@hemjoshi1724 6 лет назад
Hussain Biology sir is it possible tomorrow because I have exam ur previous lectures helped me in understanding the topic so I need for this also if possible
@hussainbiology
@hussainbiology 6 лет назад
Sorry Hem.......It is not possible to make a video and edit it within few hours...
@hemjoshi1724
@hemjoshi1724 6 лет назад
Hussain Biology ok sir
@hussainbiology
@hussainbiology 6 лет назад
Apologies,,,,,Couldn't help
@Thewiseenigma
@Thewiseenigma 4 года назад
Sr nucleotide repair ki video kb banaoge 2 sal ho gai
@BIotechnologywithAk
@BIotechnologywithAk 6 месяцев назад
❤❤
@emad9703
@emad9703 3 года назад
Where is nucleotide excision repair???
@Micro-life
@Micro-life 6 лет назад
Sir wil u plz make a video on reversion mutation?...it is complicatd, evn im nt undrstng why reversions r used to tst mutagenicity.... plz sir make me clear?😊
@hussainbiology
@hussainbiology 6 лет назад
I will definitely help you out.......
@Micro-life
@Micro-life 6 лет назад
Hussain Biology ...advance thnks sir😊😊😊
@Micro-life
@Micro-life 6 лет назад
Hussain Biology ...thnku sir fo sharing😊😊😊😊
@hussainbiology
@hussainbiology 6 лет назад
My pleasure 😊😊😊😊
@funkkern8512
@funkkern8512 3 года назад
base excision what 😳
@nabeela6467
@nabeela6467 5 лет назад
sorry what is AP Site?
@hussainbiology
@hussainbiology 5 лет назад
apurinic or apyrimidinic site. Where Purine or Pyrimidine is missing.
@ComandaKronikk
@ComandaKronikk 5 лет назад
@@hussainbiology I've been told by my professor that AP sites are strictly for missing purines
@hussainbiology
@hussainbiology 5 лет назад
@@ComandaKronikk Actually apyrimidine site is very rare since it requires high acidity to cleave off the pyrimidine from the site where as Apurine site is easily formed in the cell at lower acidity or even under neutral pH. that is why your Professor has told u it is mostly Purines.
@navitahooda6427
@navitahooda6427 6 лет назад
sir kya apki videos NET k liye b usefull hoti hain...?
@hussainbiology
@hussainbiology 6 лет назад
Hi Navita.......Yes i try to make advanced level videos and I hope you will find them useful for CSIR net.... My Channel is totally based on CSIR NET.....
@navitahooda6427
@navitahooda6427 6 лет назад
Hussain Biology thanq sir
@hussainbiology
@hussainbiology 6 лет назад
You are welcome.....
@doc.3li
@doc.3li 4 года назад
👏🏻👏🏻👏🏻
@basharatali927
@basharatali927 5 лет назад
you are from kashmir? I can tell from your sound..lol😁
@hussainbiology
@hussainbiology 5 лет назад
Indeed i am Kashmiri...
@basharatali927
@basharatali927 5 лет назад
which district? srinagar?
@hussainbiology
@hussainbiology 5 лет назад
@@basharatali927 Baramulla Pattan
@basharatali927
@basharatali927 5 лет назад
ok sir BTW I am a sheena dard from Gurez valley bandipora ..
@hussainbiology
@hussainbiology 5 лет назад
That is great......Means i have now subscriber from Gurez also...,😊😊
@a45sankhadiptoghosh64
@a45sankhadiptoghosh64 3 года назад
I think the hydrolytic deamination results in cytosine to thymine not uracil
@LinguisticLuminosity66
@LinguisticLuminosity66 18 дней назад
It's not gounine it's guanine.... correct the pronunciation Mr. 🙂
@hussainbiology
@hussainbiology 18 дней назад
Apologies....i accept i am bad at pronunciation but the point is... u understood still
@honeykushwah7200
@honeykushwah7200 5 лет назад
Plz teaches in Hindi
@wessel175
@wessel175 3 года назад
your pronounciation is a bit of. You pronounce repair as rapier. Good pronounciation is like r eee p eehhhhh r.
@karishmadeegan8297
@karishmadeegan8297 3 года назад
90 percent of his audience is Indian so I don't think pronunciation is a major concern for him. Yes it is slightly off but it doesn't need to be perfect. It's still understandable for most of his viewers :)
@janhavikuvar173
@janhavikuvar173 2 месяца назад
Tere se pucha??
@Snaomib
@Snaomib Месяц назад
L take
@kannankamal5446
@kannankamal5446 4 года назад
Video excellent bro,but voice is not clarity,make sure for that