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Biplot for principal component analysis in r 

AGRON Info-Tech
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13 окт 2024

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Комментарии : 66   
@VirtualSolace
@VirtualSolace 18 дней назад
What does clustering of all points of the same colour mean? Like one blue cluster and one red cluster?
@Minely182
@Minely182 Год назад
The best explanation I have found on RU-vid, Thank you so much!
@AGRONInfoTech
@AGRONInfoTech Год назад
Thank you for your nice comments
@Lilian.Chidinma.Nwafor
@Lilian.Chidinma.Nwafor 2 года назад
I feel so blessed finding your channel. All your videos are well explained and understood. I feel like a pro in data analysis. Thank you
@AGRONInfoTech
@AGRONInfoTech 2 года назад
Thanks for your support... :)
@kelseycoates7801
@kelseycoates7801 2 года назад
Thank you for your tutorials. It seems that ggbiplot is no longer functional in R. When I ??ggbiplot no results are returned. Is there a way to make a legible biplot in base R?
@AGRONInfoTech
@AGRONInfoTech 2 года назад
Go through the video on biplot using base graphic functions in R: ru-vid.com/video/%D0%B2%D0%B8%D0%B4%D0%B5%D0%BE-CPZjqf-Bvk8.html
@vimukthigunasekara833
@vimukthigunasekara833 2 года назад
Thanks for the Video. BTW HOW DO WE CHANGE THE VARIABLE AXIS COLOR??
@edeny7729
@edeny7729 2 года назад
Thank u sooooo much;) It help me a lot, but I fail to add color to the graph at the end, could u please explain how to do that?
@azzeddinereghais7494
@azzeddinereghais7494 3 года назад
Good evening If you want to show the first dimension (Dim1) and the third dimension (Dim3) What to do or if you can provide the code for that Thanks
@sadiahakeem8488
@sadiahakeem8488 Месяц назад
How can i add group circles defined by a second factor on this biplot? I have two factors (cropping pattern and location). Thanks
@AGRONInfoTech
@AGRONInfoTech Месяц назад
You can create two biplots. One with ellipsis indicating first factor and second with ellipsis indicating second factor.
@sadiahakeem8488
@sadiahakeem8488 Месяц назад
@@AGRONInfoTech Thanks, I have done so. But is there a possibility to add it in the same plot?
@AGRONInfoTech
@AGRONInfoTech Месяц назад
Everything is possible when you get skilled in machine learning. If you can share the dummy dataset and the R script to agron.infotech@gmail.com then I shall try to overlay the second variable ellipsis on the same plot.
@khanofficial2249
@khanofficial2249 3 года назад
Great vid. What the arrows means on each group. What it represented to us if we have environmemtal data. Thanks
@AGRONInfoTech
@AGRONInfoTech 3 года назад
The arrows in biplot represent the eigen vectors. The arrows contains the information on loadings or it represent the variable vectors. The length of the variable vectors indicate how well the variables are represented by the graph - with a perfect fit if all vectors have equal lengths. Please visit the link of blog post in description of this video for more details
@khanofficial2249
@khanofficial2249 3 года назад
@@AGRONInfoTech thank you very much sir, actually i did the same you ploted but i have three groups data where three circle represent three watersheds and on some watershed environmental variables are less but others have more. I don't know to interpret it.
@AGRONInfoTech
@AGRONInfoTech 3 года назад
Please go through interpretation of biplot in blogpost. Link is in the description of the video
@aliaslam3303
@aliaslam3303 3 года назад
You are an angel.. May Allah bless you
@AGRONInfoTech
@AGRONInfoTech 3 года назад
Thanks for your support
@aliaslam3303
@aliaslam3303 3 года назад
@@AGRONInfoTech Please make one video to do wgcna analyiss using replication data..
@AGRONInfoTech
@AGRONInfoTech 3 года назад
Sure, I shall work on it.
@MatteoBravo
@MatteoBravo 2 года назад
Thanks for the video, very useful! But I have one problem, when plotting it says Errore in validDetails.text(x) : invalid 'rot' value. How do you deal with that? Thanks!
@AGRONInfoTech
@AGRONInfoTech 2 года назад
Please send your code and screenshot of the error message at agron.infotech@gmail.com
@aiswaryaaiju5191
@aiswaryaaiju5191 4 года назад
Thank you so much! This helped me a lot.
@AGRONInfoTech
@AGRONInfoTech 4 года назад
You are most welcome
@khanofficial2249
@khanofficial2249 3 года назад
Sir how to show the sampling points name instead plus or other sign since last week i am trying to show the name of sites instead points but didn't find any function for this.
@AGRONInfoTech
@AGRONInfoTech 3 года назад
In labels argument you can specify sites by placing site variable as row names of the data set.
@khanofficial2249
@khanofficial2249 3 года назад
@@AGRONInfoTech ok thank you i will try again it.
@AGRONInfoTech
@AGRONInfoTech 3 года назад
You are welcome
@lafajrin4396
@lafajrin4396 3 года назад
How can?
@sankar_riser
@sankar_riser 4 года назад
Thank you so much for this video
@AGRONInfoTech
@AGRONInfoTech 4 года назад
Most welcome 😊
@AliHAnany
@AliHAnany 4 года назад
Thank you so much dr
@AGRONInfoTech
@AGRONInfoTech 4 года назад
Thank you too
@naeemfiaz7234
@naeemfiaz7234 4 года назад
superb 👍
@AGRONInfoTech
@AGRONInfoTech 4 года назад
Thanks dear
@hemavathimanivannan6671
@hemavathimanivannan6671 4 года назад
Great sir
@AGRONInfoTech
@AGRONInfoTech 4 года назад
Thank you
@baburao8511
@baburao8511 3 года назад
Please can you make video on how add eclipse to cca plot
@AGRONInfoTech
@AGRONInfoTech 3 года назад
Okay, I shall keep it loop for upcoming videos. Thanks for your suggestion.
@TM-ip7vm
@TM-ip7vm 4 года назад
Thanks.
@AGRONInfoTech
@AGRONInfoTech 4 года назад
You are most welcome
@wani212
@wani212 3 года назад
I get this error when I add groups=data$type , Error in names(ell)
@AGRONInfoTech
@AGRONInfoTech 3 года назад
There is some error in names attributes of group variable. See the group variables and its levels. Send me the str(data) output at agron.infotech@gmail.com
@wani212
@wani212 3 года назад
@@AGRONInfoTech Thank you so much. I figured it out.
@wani212
@wani212 3 года назад
@@AGRONInfoTech Please do a video on correlation plot
@AGRONInfoTech
@AGRONInfoTech 3 года назад
Thanks for your suggestion. My next video will be on visualising correlation
@wani212
@wani212 3 года назад
@@AGRONInfoTech One request: I have data set containing parameters from 3 tissues with 3 different treatments. How to make correlation plot? I tried with corrr() and corrplot().
@vincenzo4259
@vincenzo4259 2 года назад
Thanks
@makaratal9234
@makaratal9234 Год назад
unluckily I can't install the ggbiplot
@nept4ne
@nept4ne 4 года назад
Thanks!. New subs.
@AGRONInfoTech
@AGRONInfoTech 4 года назад
Thank you
@shopstream92
@shopstream92 4 года назад
I am unable to install_github("vqv/ggbiplot") error shows that (Error in install_github("vqv/ggbiplot") : could not find function "install_github") What I do now
@AGRONInfoTech
@AGRONInfoTech 4 года назад
Did you load the library devtools before installating package? require(devtools) If still have problem then let me know
@shopstream92
@shopstream92 4 года назад
@@AGRONInfoTech yes I load the libaray still error. I used the R version 3.6.1
@shopstream92
@shopstream92 4 года назад
@@AGRONInfoTech please reply me if you have a solution
@hossana842
@hossana842 4 года назад
@@shopstream92 the same problem here
@AGRONInfoTech
@AGRONInfoTech 4 года назад
Open the older version of R 3.5. 3 or lower in R studio. Then run the installation commands for ggbiplot. Hope this will fix the error. If still have problem let me know
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