Comparing single-cell RNA integration methods | Which is the best? 

Which single-cell integration method is the best? In this video I compare 5 different methods using 3 different challenging integration problems. I test Seurat CCA, Seurat RPCA, SCVI-tools, and Scanorama. I measure time and memory usage and also examine integration outcomes.
Github:
github.com/mou...
Datasets:
www.cell.com/c...
www.nature.com...
muscle/lung: unpublished