Hello sir! could you please explain how you prepared files such as domain parameters.text and protein gene length.text. Were these files prepared manually or generated with any software?? Also, how did you generate the gff3 file used for exon and intron visualization?? If is not too much to ask, tutorial videos on the preparation of these files and softwares needed will be highly appreciated. Thank you so much for the good work.
i have phylogenetic tree, domains from different model organisms, how if i want to align them with only rice gene strcutures?. should only rice gff3 be enough?
Dear, How can we select the number of motifs to be observed in MEME, I mean to say, what the basis behind it, either it varies from gene family to family or not. As you put 10 there.
