Wouldn't you also check piston to piston clearance with both cylinders and also check both crankcases for crankpin nut clearance on top of what you did check. Also the rod to rod clearance. Just sayin'
You have four points and marked accordingly. Then if you modify for smaller or longer stroke you know the difference Then this is why the horse shoe shape in the side of the piston for clearance AFFA angels never die nffn HMS council