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How to do CI-NEB calculation in VASP | Nudged Elastic Band Tutorial | NEB Calculation using VASP 

db infotech
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Greetings, dear viewers!
In this video, we'll explore How to do CI-NEB calculation in VASP. If you discover this information to be beneficial, kindly express your support by giving it a thumbs up, leaving a comment, and sharing it with others. We appreciate your viewership.
Warm regards,
SB
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18 сен 2024

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Комментарии : 61   
@computational_physicist
@computational_physicist 4 месяца назад
Thank you so much for this video lecture. This is extremely helpful! I understand the entire process at a single go. Thans alot...
@dbinfotech
@dbinfotech 4 месяца назад
You're very welcome!
@user-es6hh9nd2t
@user-es6hh9nd2t 10 месяцев назад
BEST CHANNEL FOR VASP CALCULATIONS
@dbinfotech
@dbinfotech 10 месяцев назад
Thank you for your support and valuble comment.
@karthigamanivannan7922
@karthigamanivannan7922 11 месяцев назад
thank you sir for providing such a clear lecture on ci-neb calculation. This lecture was very helpful for me to move forward in my research
@Learning432
@Learning432 8 месяцев назад
Please make a video on how to compile the VTST tool with VASP for CI-NEB calculations?
@user-rc2ou2em9f
@user-rc2ou2em9f 5 месяцев назад
yes please
@Vinay192
@Vinay192 11 месяцев назад
Thanks for sharing, extremely helpful!
@dbinfotech
@dbinfotech 11 месяцев назад
Thank you for your comment and support, I kindly request you to please subscribe my channel, like and share to your friends. Thank you SB
@asiyeshokri9544
@asiyeshokri9544 2 месяца назад
Thank you for great training. My question is if we can have a gues for our final position instead of optimizing atoms? fixing all atoms for initial structure and do energy optimisation. And do the same for our guess final structure. So we will have outcars too. (I am thinking of a bulk structure with on dopping atom)
@hazy235
@hazy235 10 месяцев назад
Sir, Thank you for providing such an informative video. I request you to make a video on Phonon calculations.
@dbinfotech
@dbinfotech 10 месяцев назад
We will do it, thank you for your comment and support.
@LiaqatAli-vf9zf
@LiaqatAli-vf9zf 8 дней назад
For frequency calculations, how you get -170 cm-1, but in your OUTCAR file it is 170cm-1 at transition state?
@RinuJacob-rc7qd
@RinuJacob-rc7qd 11 месяцев назад
Can you make video on ICOHP calculation using lobster?Thanks for this video.
@dbinfotech
@dbinfotech 11 месяцев назад
I have made three videos for COHP Calculation Using VASP. If you discover this information to be beneficial, kindly express your support by giving it a thumbs up, leaving a comment, and sharing it with others. We appreciate your viewership. 1. How to do calculation for Crystal Orbital Hamilton Population COHP Analysis | LOBSTER Analysis ru-vid.com/video/%D0%B2%D0%B8%D0%B4%D0%B5%D0%BE-7bFh4jKjW_w.html 2. How to download LOBSTER code for COHP Analysis ru-vid.com/video/%D0%B2%D0%B8%D0%B4%D0%B5%D0%BE-20gi6LkFDUY.html 3. How to do pCOHP plot using OriginPro - PART 2 | Analysis of pCOHP results ru-vid.com/video/%D0%B2%D0%B8%D0%B4%D0%B5%D0%BE-3LsLy1w6tO8.html Thank you Best SB
@radhansomaiya
@radhansomaiya 10 месяцев назад
@@dbinfotech Thanks for mentioning, I will go through this videos.
@phd.with_bee-zp3xx
@phd.with_bee-zp3xx 4 месяца назад
should we put INCAR and KPOINT and POTCAR file in all the folders from 00 to 05 or only to folder 00 and 05
@dbinfotech
@dbinfotech 4 месяца назад
Only POSCAR file only presents in 00 - 05 dub folder, put all the sub folders one main folder and add INCAR, POTCAR, KPOINTS and job submission scripts file, then finally submit your job.
@ChaitraBorkar
@ChaitraBorkar 3 месяца назад
HI sir! I had one question... Does VASP have an in-built provision for ciNEB or VTST is required for that??
@dbinfotech
@dbinfotech 3 месяца назад
There’s no inbuilt of vtst, you have to compile vasp vtst and install
@ChaitraBorkar
@ChaitraBorkar 3 месяца назад
So ciNEB function is not present in VASP? VTST has to be compiled with VASP to use it... Correct?
@dbinfotech
@dbinfotech 3 месяца назад
@ChaitraBorkar yes
@user-lq5gt8ww3e
@user-lq5gt8ww3e 10 месяцев назад
Great Video! Did you froze your surface except moving atoms when running CINEB (the surfaces of initial and final POSCARs should be frozen)?
@dbinfotech
@dbinfotech 10 месяцев назад
for 2d structures i did not fix, we need do transition all atoms, if you use 3d crystals like CeO2 (111) surface then we will fix some bottom layers (for opt and NEB etc). other top layer and adsorbates need to allow for transitions ( T T T)
@user-lq5gt8ww3e
@user-lq5gt8ww3e 9 месяцев назад
Thank you so much
@theta-o1t
@theta-o1t 11 месяцев назад
Hi, thanks for uploading such an informative video. In nebef.dat folder, the first column is all zero and my set value of forces is 0.1. So, is it ok? secondly, the structure is not converged after making images and after 300 steps. The incar is ok and energy was increasing. Can you help in these two questions?
@dbinfotech
@dbinfotech 10 месяцев назад
THANK YOU FOR YOUR COMMENT AND SUPPORT. My suggestion is you can use force for geometry optimization for EDIFFG = -0.02, EDIFF = 1E-05, and for neb please use EDIFFG = -0.03 and EDIFF = 1E-06, if you use like this neb calculation converge easily, this is suggested my friend in tsinghua university. Thank you best SB
@radhansomaiya
@radhansomaiya 10 месяцев назад
Hey Hi, Thank you for providing such a detailed description of the CI-NEB calculation. But I need to know the structure of INCAR file for 00 and 05 i.e. initial and final structures. Also since you were mentioning about geometry optimization for these two structures, don't you think that if you do a geometry optimization of initial structure then you will get the final structure.
@dbinfotech
@dbinfotech 10 месяцев назад
Sorry I couldn’t get your comment.
@radhansomaiya
@radhansomaiya 10 месяцев назад
@@dbinfotech What INCAR do you use for optimizing initial and final structure to obtain respective OUTCARs
@dbinfotech
@dbinfotech 10 месяцев назад
@radhansomaiya, please look this video: ru-vid.com/video/%D0%B2%D0%B8%D0%B4%D0%B5%D0%BE-S5fARRzbsgs.htmlsi=l0Q3F5GWvUtn2AVk this video made for how to geo opt, model INCAR files download link provided in description box, please download and use it. Thank you
@radhansomaiya
@radhansomaiya 10 месяцев назад
@@dbinfotech Hey I just need your expertise in understanding how did you obtained the OUTCARS for 00 and 05. I mean did you perform SCF calculations or did a geometry optimization? I have already went through the above video. But I make a geometry optimization of my initial structure.. I am getting final structure, which further I will consider as POSCAR1 and POSCAR2. But the what calculation i will have to perform to get the OUTCARs for them. Please help.
@radhansomaiya
@radhansomaiya 10 месяцев назад
Still hoping to get a fruitful response please
@theta-o1t
@theta-o1t 10 месяцев назад
One point I need to clear, can we put outcar into 00 and 05 after the NEB job is completed like before getting results. I forgot to add Outcar into the first and last folders and run the calculation. Can I add that later before the results command?
@dbinfotech
@dbinfotech 10 месяцев назад
You can add later also, if want use that nebef.pl command, please put that outcar file and do nebef.pl command. After completion of calculations also we can add, and do nebresults command
@theta-o1t
@theta-o1t 10 месяцев назад
Thank alot
@faradaymahe
@faradaymahe 10 месяцев назад
Can you please make video how to calculate d band center?
@yosraphysics8066
@yosraphysics8066 6 месяцев назад
Thanks alot Can not we use IVDW İn NEB calculations
@dbinfotech
@dbinfotech 5 месяцев назад
You can, but it will more computational time
@anila5561
@anila5561 7 месяцев назад
Sir, I have question. The bond length of atoms is similar in the structure but the value of two different paths is different. If they planced at the same distance how diffusion barrier could be different for one path to another. Which factors the paths depends
@theta-o1t
@theta-o1t 9 месяцев назад
Hi, I am calculating NEB of ABO3 structure, the images are optimized, but the energy of the images is very high as compared to the initial and final points. The barrier is high as a result. What could be the problem?
@radhansomaiya
@radhansomaiya 10 месяцев назад
Also I would like to know that POTIM default value is 0.5 for IBRION=1|2|3, then the motivation behind choosing 0.2.
@anila5561
@anila5561 9 месяцев назад
We used contcar of optimized structures or should we use contcar of scf calculations. I'm using the optimized structure contcars as poscar but it doesn't convergeing. Energy is increasing and then start decreasing. Please respond these two confusions
@dbinfotech
@dbinfotech 9 месяцев назад
Optimized CONTCAR or SCF CONTCAR are same only, please check the geometry of transition state images, if ts images is not reasonable configuration, then it won’t converge, then you stop ci-neb calculation, try to do with dimer method. This may work. Thank you SB
@anila5561
@anila5561 9 месяцев назад
@@dbinfotech the structures looks ok not very displaced. What's the dimmer method. Do you have any video on this
@dbinfotech
@dbinfotech 9 месяцев назад
How to run the VASP calculation with the DIMER method | Transition state searches with Dimer method ru-vid.com/video/%D0%B2%D0%B8%D0%B4%D0%B5%D0%BE-MYXnNirhQKg.html
@anila5561
@anila5561 9 месяцев назад
@@dbinfotech I'm facing a problem while NEB calculations. The energy goes increasing smoothly and it looks converging but after some steps it decreasing again. Everything looks normal what should be the reason. Its been from one months
@UvinDeAlwis
@UvinDeAlwis 7 месяцев назад
Should the LCLIMB tag for CI-NEB = .TRUE. or = TRUE ?
@anischaouachi8555
@anischaouachi8555 8 месяцев назад
I try this example I get this error: ZBRENT: fatal error in bracketing | please rerun with smaller EDIFF, or copy CONTCAR | to POSCAR and continue. Can someone help me. Thanks
@bvgujjkd1309
@bvgujjkd1309 8 месяцев назад
Why I can't run NEB. It would report error 'POSCAR not found'. I use vasp compiled with NEB, and all preparations are same, i.e. subdirectories containing POSCAR and parent directory containing other input files and job script.
@trivaaniyadav6873
@trivaaniyadav6873 4 месяца назад
same issue!
@hichamoughidni588
@hichamoughidni588 Месяц назад
how to get outcars sir ???
@hichamoughidni588
@hichamoughidni588 Месяц назад
@dbinfotech
@radhansomaiya
@radhansomaiya 10 месяцев назад
One of my comment on IBRION is not visible now !!!
@khan49337
@khan49337 11 месяцев назад
hi sir how to extract data for origin
@dbinfotech
@dbinfotech 11 месяцев назад
Hi Thank you for your comment. I could not understand your question, please let me know, which data want to extract. thanak you Best SB
@khan49337
@khan49337 11 месяцев назад
@@dbinfotech Sir, I mean the NEB plot in the origin software that you showed in the video. It was generated in EPS format. However, if I want to recreate it in its origin software, which file should I use to obtain the data? I obtained all the files by running the 'nebreuslts' command but couldn't find the EPS file.
@dbinfotech
@dbinfotech 11 месяцев назад
There no use of the .eps plot, no need to worry, if you run nebef.pl you will find the TS with higher enegry, you can also find that enegy from OSZICAR and vasp.out file , use that energy to calaculate the reaction enegy profile.Thats it.
@yosraphysics8066
@yosraphysics8066 6 месяцев назад
Thanks a lot. Can you tell me which data did you use to plot the figure? Thanks in advance
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