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How to install packages in R? What is CRAN? What is Bioconductor? | Bioinformatics 101 

Bioinformagician
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Are you new to R and trying to learn how to install packages in R? Do you find yourself asking what is CRAN, what is bioconductor? How to install packages from bioconductor or github?
This video aims to answer all the questions above. In this video I talk about different sources where R packages are deposited as well as demonstrate how to install packages from these sources.
I hope you find this video helpful! Leave your thoughts in the comment section below!
▸ Code:
github.com/kpatel427/RU-vidT...
Chapters:
00:00 Intro
1:06 Sources of R packages
3:27 Multiple ways to install packages in R
3:53 Diagrammatic representation of installing R packages
5:41 Familiarizing with RStudio
7:39 Installing CRAN package using R install.packages()
8:48 Installing CRAN packages GUI
10:00 Install CRAN packages from a source file
13:03 Install package from Github
15:41 Install package from Bioconductor
18:41 Where are my packages stored?
19:19 How to remove packages?
You can show your support and encouragement by buying me a coffee:
www.buymeacoffee.com/bioinfor...
To get in touch:
Website: bioinformagician.org/
Github: github.com/kpatel427
Email: khushbu_p@hotmail.com
#bioinformagician #bioinformatics #cran #bioconductor #funcotator #variantcalling #variants #gatk #vcf #gvcf #haplotype #alleles #geneticvariants #mutations #gff3 #gff #gtf #sam #bam #phred #fasta #fastq #singlecell #10X #ensembl #biomart #annotationdbi #annotables #affymetrix #microarray #affy #ncbi #genomics #beginners #tutorial #howto #omics #research #biology #GEO #rnaseq #ngs

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1 авг 2024

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Комментарии : 25   
@thecancerbiologiststudent
@thecancerbiologiststudent 6 месяцев назад
This was super helpful as a PhD student, thank you!
@hyrunnisa997
@hyrunnisa997 Год назад
yay!!! i am so glad I found our channel!! i am going to go through every single tutorial!! this is amazing. keep up the good work.
@abhisekdey6428
@abhisekdey6428 Год назад
I really appreciate your hard work behind all these videos I'll request you, mam, please create a biostatistics playlist from basic to advanced statistics which are very essential for a bioinformatics student. Thank you so much god bless you.
@Bioinformagician
@Bioinformagician Год назад
Your suggestion is duly noted. Thank you! I will surely give this a thought.
@aritahalder9397
@aritahalder9397 Год назад
Great video. I am starting with R and bioinformatics. Your videos are really helpful
@souheirmouchawrab2817
@souheirmouchawrab2817 6 месяцев назад
Thank you for the easy, interesting and briefed explanation of your videos
@vipeenkuchbhi7975
@vipeenkuchbhi7975 4 месяца назад
I am not for bio field but really get to know a lot of new things from your video
@user-nc4ql9ou9l
@user-nc4ql9ou9l 7 месяцев назад
Was great, please more content like this!
@metabolism4738
@metabolism4738 Год назад
This is really great! Thank you for the good job.
@fs7463
@fs7463 10 месяцев назад
Thank you making everyting that much clear! I would appreciate if you can tell while writing the code , for example why we are telling repos=NULL. It would be very helpful for whom(like me) not familiar with R and starting to study it recently. Thanks!!
@ahmedal-mammari9639
@ahmedal-mammari9639 Год назад
thank you so much, great video
@Brazilian.Maithe
@Brazilian.Maithe Год назад
You're the best! Thanks a lot!
@ivyvien3364
@ivyvien3364 Год назад
Thank you so much fore this
@anmolpardeshi3138
@anmolpardeshi3138 Год назад
awesome video!
@tolga1292
@tolga1292 Год назад
wonderful
@shadow727
@shadow727 Год назад
hi, could you tell the name of addins you installed? thank you
@akanshasingh1061
@akanshasingh1061 Год назад
hey thank u so much.... im facing problem for dowloding packages
@MrRamaeri
@MrRamaeri Год назад
God bless you always
@jyotiposwal5672
@jyotiposwal5672 10 месяцев назад
hello, ma'am I couldn't download the Geoquery package in R studio4.3.1 Please help me it will be constructive for me.
@naveennaveenkumar7127
@naveennaveenkumar7127 Месяц назад
hello I am trying to install the packages in R I have installed the bioconductor package but the I have to instal the DESeq2 package when I am trying to install this package it is showing me like this Warning in install.packages : package ‘DESeq2’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas can u tell me how to solve this problem
@maruthiram5523
@maruthiram5523 Год назад
how to install R studio? can you make a video and share
@RifatMustansir
@RifatMustansir 2 месяца назад
Aoa Mam Kuch package install ho jeta hai lakeen activate nhi huta
@ahmedal-mammari9639
@ahmedal-mammari9639 Год назад
please I sent you an email about the ROC curve
@spirituala3616
@spirituala3616 Год назад
you are what i was missing while doing my bachelor 🥹🫶🏼
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