Please consider subscribing to my channel by hitting the "Subscribe" button. It is absolutely free and there are no charges. But if you like what I am doing and you do want to support my channel, consider making a voluntary donation at / joshbanta . It helps me to deliver more content and to keep this channel active.
This tutorial also installs the R package 'ENMEval,' as well as the dependency R packages 'xml2,' 'tidyverse,' and 'rJava,' under Ubuntu Linux version 20.04. The ENMEval package is used to find the best settings for running the ecological niche modeling (also known as species distribution modeling) software Maxent.
This tutorial assumes you already have R and Rstudio installed. See my tutorial for installing those software here:
• How to install R and R...
Want to know how to run the ENMEval package once you've installed it? See my other video: • How to decide which se... .
I also have one for running Maxent:
• How to perform species...
This tutorial assumes you are using Ubuntu Linux version 20.04 as your operating system. If you do not have a computer running Ubuntu, fear not. You can install Ubuntu as a virtual machine within your current operating system. It is all free.
The instructions for Windows computers are here:
• Install Ubuntu on Virt...
The instructions for Mac computers are here (from 0:00 to 5:37):
• How to Install Windows...
Code I used in this tutorial:
sudo apt update
sudo apt install libcurl4-openssl-dev libssl-dev libxml2-dev
sudo apt install libgeos-dev
sudo apt-get install libgdal-dev libproj-dev
sudo Rscript --slave --no-save --no-restore-history -e "install.packages(pkgs='xml2', dependencies=TRUE, repos=c('ftp.heanet.ie/m..."
sudo Rscript --slave --no-save --no-restore-history -e "install.packages(pkgs='tidyverse', dependencies=TRUE, repos=c('ftp.heanet.ie/m..."
sudo Rscript --slave --no-save --no-restore-history -e "install.packages(pkgs='ENMeval', dependencies=TRUE, repos=c('ftp.heanet.ie/m..."
sudo apt-get install -y default-jre
sudo apt-get install -y default-jdk
sudo R CMD javareconf
sudo Rscript --slave --no-save --no-restore-history -e "install.packages(pkgs='rJava', dependencies=TRUE, repos=c('ftp.heanet.ie/m..."
But you can actually skip this tutorial if you just use my pre-configured Ubuntu Linux virtual machine! Read more below.
FYI:
I have made a Linux virtual machine that is pre-configured with population genetics and ecological niche modeling programs. I have made videos explaining how to hook up this virtual machine within your Mac or Windows computer, so that you can start using the pre-configured software without having to install any of them (and even without having to install Ubuntu Linux!).
Windows: • Ubuntu 20.04 virtual m...
Mac: • Ubuntu 20.04 virtual m...
8 сен 2024
