at the time of installing the database is shows error "Error: aria2c could not be found. Please install aria2c (sudo apt install aria2)." in spite of having aria2 installed.
I have two peptides with 17 residues each, one is head to tail cyclic peptide and the other is stapled peptide. Does alphafold2 work with chemically modified peptides?
I think there is also a full online version of rosettafold that I can record a video on it and for that I don't think there is any need for a local version. For alphafold the local version uses the full database and the online one uses a smaller database. So, the local's result is more accurate in some cases.
@@rezarezaei4868 hi Reza, Yes I did some digging yesterday and found that the Baker lab website has an online submission point so it is easy enough to look at individual proteins- however I am unsure of how to build complexes (I heard that if you just add a flexible linker and repeat the monomer N Times that can work, so might try that with the server submission)
Hi, actually I haven't tested this myself but I read that if you put a monomer first and then a hundred X and then the sequence of the second polypeptide, you can predict the dimer structure. But I'm not sure how accurate that would be. There have been some interesting results using this method! However, the current version does not natively support dimers.
