Molecular Dynamic Simulation Online (Part 1)|Ligand-target interaction|iMODS tutorial

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Online molecular dynamic simulation (MD simulations) by using iMODS online web server. Preparing files in PDB format in discovery studio visualizer after docking studies for ligand-target interaction, DNA-protein interaction and computer-aided drug design ‪@MajidAli2020‬

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1 окт 2024

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Комментарии : 50

@sriknathpenumala5258 2 месяца назад

Sir but in complex ligand is not visible in imod web server

@imranchemist7342 Год назад

MashAllah very Informative video.. How to obtain those graphs in which nanonscanes are mentioned.?

@jaweriabatool4318 7 месяцев назад

Lkn server download Kahan se krna???

@MajidAli2020 7 месяцев назад

Use it online

@bemotivate4938 4 месяца назад

How to make √3 × √3 surface model of any matel

@rashamoustafa427 11 месяцев назад

This is magnificent 👏 👌 🙌 gurgas fantastic 👏 lecture Doctor blesses by Allaha and may all your days be great 👍

@MKSILVA8405 11 месяцев назад

Are you able to access iMODS?

@NessaibiaHanen 9 месяцев назад

Please give me the correct link of iMods. I couldn't get into it

@NessaibiaHanen 9 месяцев назад

Please give me the correct link of iMods. I couldn't get into it

@ouidedbenslama783 Год назад

مشاء الله ربي يزيدك علما و يجعلها في ميزان حسناتك

@biomedicalscientistmuhammad 5 месяцев назад

but dear dr why the ligand do not appear !!

@MajidAli2020 5 месяцев назад

It appears look in part 2

@biomedicalscientistmuhammad 5 месяцев назад

Can i plot rmsd using the data i get ?

@biomedicalscientistmuhammad 5 месяцев назад

and how can i get a vedio for my simulation

@eshajadoon8492 Год назад

👏👏

@NessaibiaHanen 9 месяцев назад

Please give me the correct link of iModS. I couldn't get into it

@MajidAli2020 9 месяцев назад

Search in google u will get it

@NessaibiaHanen 9 месяцев назад

I didn't find it

@rimshakhushal174 Год назад

Informative👍

@ProfAhmedALi Год назад

Very clear

@jeevakanthv 9 месяцев назад

I didn't get proper link. Put how to download video pls

@learnwithtricksandfun4876 Год назад

Phenomenal 👍👍

@adeelakram3811 Год назад

i perform all steps but iMODS show error no job done

@samsoonmaharifa6687 Год назад

Sir I am not able to save the ligand protein complex as pdb file in DSV Can you help to trouble shoot it? Thank you

@MajidAli2020 Год назад

Sure

@adeelakram3811 Год назад

have same problem, it only consider protein

@MajidAli2020 Год назад

Look at my second video of MD simulation it will clear ur concepts more

@samsoonmaharifa6687 Год назад

Thank you

@mdhasanali3158 8 месяцев назад

how can i open iMODS server?

@-Saadff Год назад

👍

@ayeshaabrar7523 Год назад

👍👍

@hafsaishfaq4574 Год назад

👍👍

@-LaibaPrincess Год назад

👍

@BabyDoll-rp4jr Год назад

Sir, iMODS mn prepared protein open karn ya PDB format mn downloaded protein qk Meri protein mn missing residue bi boht thy mn ny modified ke or phr protein prepared ke.. Kindly assist me out there; Thanks

@MajidAli2020 Год назад

Missing residues will remain as such either u open in PDB or not

@anila5561 8 месяцев назад

Sir I have done MD simulation but after 2500 fs the energy is changed , lower than straight line. How can we justify this or check the bond length changes with time

@MajidAli2020 8 месяцев назад

Where did u perform and which software u used

@anila5561 8 месяцев назад

@@MajidAli2020 Im using vasp to perform MD simulations