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Genomics Guru
Genomics Guru
Genomics Guru
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Accessible videos helping to explain aspects of human genome biology.
Brought to you by Dr Katherine West (School of Life Sciences) and Dr Adam West (Institute of Cancer Sciences) at the University of Glasgow, Scotland.
RNA-SEQ WITH THE UCSC GENOME BROWSER
22:54
4 года назад
GENE EDITING EXPLAINED!
20:29
4 года назад
Introduction to chromatin structure
8:57
4 года назад
Комментарии
@yaseenkattan
@yaseenkattan 3 дня назад
Mandatory viewing for using the tool, thank you!
@chisomjoshuaonu4059
@chisomjoshuaonu4059 10 дней назад
Great presentation
@sreeram6416
@sreeram6416 21 день назад
in the enter gene list can we provide the id of our circular rna?
@nadiyatariq1822
@nadiyatariq1822 Месяц назад
Awesome
@adeldz6939
@adeldz6939 Месяц назад
In the first step, do you mean about id the accession number or another id ?
@mostafajahanifar4716
@mostafajahanifar4716 2 месяца назад
It was a great tutorial. It would be nice if you could expand on the meaning of each part and their function in another video. For example, maybe explain how the acquired data can be used in research (or at least provide resources for beginners to follow and learn more). Also, if there are technical or specific types of plots that can visualize the results taken from DAVID, it would be very nice if you can cover them as well.
@sheetal_soul
@sheetal_soul 2 месяца назад
what is the alternative for Drosophila?
@sabirasharif2207
@sabirasharif2207 3 месяца назад
Thankyou
@anirakbenadam112
@anirakbenadam112 3 месяца назад
Your explantions are very clear, I enjoyed your videos and learned a lot. Thank you very much!!!
@catherinepuellomora8041
@catherinepuellomora8041 3 месяца назад
Very clear and specific ¡¡thanks
@cherylmockotr
@cherylmockotr 3 месяца назад
Fabulous! I haven't paid attention to epigenetic advancements in a decade or more, and am amazed at how much more has been discovered. The complexity blows me away!!
@chuanyuguo3232
@chuanyuguo3232 3 месяца назад
So how to use this software to do GSEA based on a specific subset genes or a defined subset genes by ourselves?
@GenomicsGurus
@GenomicsGurus 3 месяца назад
You can create your own list of genes. Download one of the genesets so you can see the format - it's very straightforward.
@chuanyuguo3232
@chuanyuguo3232 3 месяца назад
Thanks. Where I can upload my own list of the genes in the software?@@GenomicsGurus
@GenomicsGurus
@GenomicsGurus 3 месяца назад
@@chuanyuguo3232 Upload your gmx file using the load data process. Then, when you choose the gene sets database, there is a tab called gene matrix (localgmx.gmt), and you should see your file listed there. Good luck!
@micahforsythe4684
@micahforsythe4684 4 месяца назад
This was very helpful thanks!
@renatameza4947
@renatameza4947 4 месяца назад
What means enrichment?
@GenomicsGurus
@GenomicsGurus 4 месяца назад
If something is enriched, it means there is more of it in the sample
@gregsmith6756
@gregsmith6756 4 месяца назад
I'm going to have to watch the Prime editing part 10 times more to understand it. It's simple yet complicated.
@itscoldhere7618
@itscoldhere7618 4 месяца назад
thank you
@meltemtutar4673
@meltemtutar4673 6 месяцев назад
Hi, thanks for the tutorial. I had some trouble downloading the GSEA software so I ended up using the GenePattern UI. Is there any downside to using this website instead of the GSEA desktop application? Thanks
@user-oo7oo9pw5l
@user-oo7oo9pw5l 7 месяцев назад
Really nice and useful video. Thank you.
@GenomicsGurus
@GenomicsGurus 7 месяцев назад
Glad it was helpful!
@itscoldhere7618
@itscoldhere7618 7 месяцев назад
So much help. Thank you.
@GenomicsGurus
@GenomicsGurus 7 месяцев назад
Glad it helped!
@user-nu1sb2ob8x
@user-nu1sb2ob8x 7 месяцев назад
Thank you so much for this tutorial! I'm new to proteomics and this video helped me a lot to get started on my data analysis
@GenomicsGurus
@GenomicsGurus 7 месяцев назад
Glad it was helpful!
@mahideenafridi2934
@mahideenafridi2934 7 месяцев назад
great
@user-sh2ct4sk2o
@user-sh2ct4sk2o 8 месяцев назад
Thanks! Beatifull lecture. Really sad that you stopped making videos
@siavashkhosravi3175
@siavashkhosravi3175 8 месяцев назад
thanks god, someone finally made all these clear. great job.
@catcatmiaomiao5850
@catcatmiaomiao5850 9 месяцев назад
better explanation than my prof. who only says useless nonsense during the lectures.
@SvitlanaKamenska
@SvitlanaKamenska 9 месяцев назад
Thank you! It is very well explained complext topic
@user-rf1nr1em3c
@user-rf1nr1em3c 10 месяцев назад
This is GOLD! I am a biologist who does not know anything about bioinformatics, i've done a differential expression analysis of genes using RStudio and then i was like, what now, what to do with these DEGs? And then i found this amazing tutorial! THANK YOU! <3
@shivamsingh21
@shivamsingh21 11 месяцев назад
Superb concept So much Thank
@user-su1fl5do9z
@user-su1fl5do9z 11 месяцев назад
Very useful, thank you!
@Bee-zp5vo
@Bee-zp5vo 11 месяцев назад
A great help. Thankyou mam
@elviras1949
@elviras1949 11 месяцев назад
Thank you very much for the video! It helps! I have my functional annotation chart of GO TERM, now how could I export it to excel?
@GenomicsGurus
@GenomicsGurus 11 месяцев назад
You would need to download the spreadsheet data (there is button to do that) and then plot your own graph in excel
@elviras1949
@elviras1949 11 месяцев назад
@@GenomicsGurus thank you!
@analiasoledad6999
@analiasoledad6999 Год назад
This video is amazing, so far my favorite. Really clear and straightforward, I truly appreciate it! Great job! many thanks :)
@GenomicsGurus
@GenomicsGurus Год назад
Thanks!
@Kehinde747
@Kehinde747 Год назад
Very helpful - I have dabbled with DAVID from occasionally but this is the first time I really understood how to move beyond the initial set of results it gives.
@GenomicsGurus
@GenomicsGurus Год назад
Great :)
@aaakashable
@aaakashable Год назад
Excellent talk Katherine
@faridhakimi1146
@faridhakimi1146 Год назад
Lovely ❤thanks for the great lecture
@jamesraymond1158
@jamesraymond1158 Год назад
Excellent! I finally understand it. However, one question: at 3:40 where the TALENs are biding to the DNA, it seems that the TALENs are too bulky to fit close enough together to bind to successive nucleotides.
@GenomicsGurus
@GenomicsGurus Год назад
The successive domains curve round the the DNA helix like a propeller - it's an amazing structure
@anilkumarram7731
@anilkumarram7731 Год назад
Great
@user-ei4ek9iv7x
@user-ei4ek9iv7x Год назад
Thank you for this video I have a problem: GSEA don't run with download files from GSEA with .gmt format. I want to use the gene sets that I selected. Can anybody help me? Thank you so much
@s0n1c88
@s0n1c88 Год назад
I have a wish 🙏 god, please let her return to youtube to make her awesome videos 🙏 Amen 🙏 Love from Turkey My Teacher 🙏
@edthoreum7625
@edthoreum7625 Год назад
5:00 histone
@lumpyspaceprincess6335
@lumpyspaceprincess6335 Год назад
Is this channel aims scientists
@xuzhiwen8298
@xuzhiwen8298 Год назад
Super helpful and clear tutorial! I appreciate you saved me a lot time to figure out how to do such analysis!
@agnihotrinitin
@agnihotrinitin Год назад
Extremely helpful. Thank you very much.
@akashphukan6452
@akashphukan6452 Год назад
Thank you
@akashphukan6452
@akashphukan6452 Год назад
Thank you
@KimsDerick7
@KimsDerick7 Год назад
Thank you so much. You have explained it in a simple and understanding way. I rate 5/5.
@erfan74ir
@erfan74ir Год назад
Thanks for the great resources you made. Very helpful :-).
@SB-nh7uv
@SB-nh7uv Год назад
Thank you for the video. How does one screen for mutations cause by off-target cutting of Cas9?
@brunnasilva4015
@brunnasilva4015 Год назад
Nice video!
@jsswmarshalls
@jsswmarshalls Год назад
Such an amazing walk through! Thank you so much for this! I have one snag, I am not sure which chip platform I am supposed to choose. I have nanostring data of mouse mRNA. Any idea which one I am supposed to choose? My gene list looks like this: PTGS2 AVP CLN8 NGFR I also have accession numbers, but when I upload this list and choose accession, it still does not work. Thank you again!!
@GenomicsGurus
@GenomicsGurus Год назад
I don't remember which is which, but you can check by downloading the chip platform files from their website and seeing which one uses gene symbols like your list.
@user-ff4sh5wc1g
@user-ff4sh5wc1g Год назад
47 and dun!