Accessible videos helping to explain aspects of human genome biology. Brought to you by Dr Katherine West (School of Life Sciences) and Dr Adam West (Institute of Cancer Sciences) at the University of Glasgow, Scotland.
It was a great tutorial. It would be nice if you could expand on the meaning of each part and their function in another video. For example, maybe explain how the acquired data can be used in research (or at least provide resources for beginners to follow and learn more). Also, if there are technical or specific types of plots that can visualize the results taken from DAVID, it would be very nice if you can cover them as well.
Fabulous! I haven't paid attention to epigenetic advancements in a decade or more, and am amazed at how much more has been discovered. The complexity blows me away!!
@@chuanyuguo3232 Upload your gmx file using the load data process. Then, when you choose the gene sets database, there is a tab called gene matrix (localgmx.gmt), and you should see your file listed there. Good luck!
Hi, thanks for the tutorial. I had some trouble downloading the GSEA software so I ended up using the GenePattern UI. Is there any downside to using this website instead of the GSEA desktop application? Thanks
This is GOLD! I am a biologist who does not know anything about bioinformatics, i've done a differential expression analysis of genes using RStudio and then i was like, what now, what to do with these DEGs? And then i found this amazing tutorial! THANK YOU! <3
Very helpful - I have dabbled with DAVID from occasionally but this is the first time I really understood how to move beyond the initial set of results it gives.
Excellent! I finally understand it. However, one question: at 3:40 where the TALENs are biding to the DNA, it seems that the TALENs are too bulky to fit close enough together to bind to successive nucleotides.
Thank you for this video I have a problem: GSEA don't run with download files from GSEA with .gmt format. I want to use the gene sets that I selected. Can anybody help me? Thank you so much
Such an amazing walk through! Thank you so much for this! I have one snag, I am not sure which chip platform I am supposed to choose. I have nanostring data of mouse mRNA. Any idea which one I am supposed to choose? My gene list looks like this: PTGS2 AVP CLN8 NGFR I also have accession numbers, but when I upload this list and choose accession, it still does not work. Thank you again!!
I don't remember which is which, but you can check by downloading the chip platform files from their website and seeing which one uses gene symbols like your list.