AMBER Tutorial: How to Prepare PDB File for MD Simulation 

Sir do you perform pca analysis of protein?

How to make topology file of protein containing heme group

hie..i am doing research where i am learning autodocking and MD simulations using Amber...i am having problem running MD ...i want to ask if you can provide me zoom class where you can teach me amber as i am stuck in few commands

please start DNA - MD simulation

hello sir I have given the command "solvateBox MOL2 TIP3PBOX 10.0" but I am encountering an error Error: solvateBox: Argument #2 is type String must be of type: [unit] usage: solvateBox [iso] [closeness] how to rectify this ...plz help me out!!!!!!

Hello Gaurav. Can you please provide me your email? I have some queries about a simulation that I am running.

Hii