How I organize my bioinformatics work

Подписаться 40 тыс.

Просмотров 11 тыс.

50% 1

3 systems I use to keep myself organized when doing bioinformatics work.
These are lightweight, flexible systems built on top of git, basic text files, and a single Google Doc -- no to-do list apps here :)
0:00 Introduction
1:07 The lab notebook
5:05 The journal
11:17 The logs

Наука

Опубликовано:

31 май 2024

Ссылка:

Скачать:

Готовим ссылку...

Добавить в:

Мой плейлист

Посмотреть позже

Комментарии : 15

@AshleeThomson Год назад

Thank you!!! I've just started my PhD in Bioinformatics and love hearing about all the ways to organise everything. I will definitely be using the lab notebook and log systems. I already use VSC but never thought to use it like that!! Also a great way to share progress updates with my supervisor.

@jonasan478 Год назад

enjoyed reading your paper "Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line" ! !

@roland13380 Год назад

It was perfect. I'll get the git lab notebook and I use Trello as my everyday Kanban system (using it combined with the GTD approach) as a replacement for the Google doc. I like the minimalistic and so efficient way you use those tools :) Thanks a lot for sharing that :)

@giovannimadrigal3199 Год назад

These simple but informative videos really go a long way. Thank you for the video and great advice! Maybe a video on how you go through the literature will be helpful in the future 🙂

@miguelmmb3 Год назад

Thank you!

@eugrus Год назад

Did you ever try any "pure" outliner like maybe Workflowy instead of Google Docs?

@OMGenomics Год назад

No, Google docs is perfect for my use case. There are benefits to using the same tool, for example it’s easy to copy things into other documents (like my team’s weekly sync doc) without worrying about formatting issues. Also the shortcuts are all the same so I get more efficient at writing all types of docs at once. I like to keep things simple, and to me Docs is simpler than anything else I could be doing. What do you use?

@wilzgaming777 Год назад

Thank you! I am currently a master student and hoping to enroll to a PhD in bioinformatics next year, can you make a video on how to prepare and get accepted please...

@saddoggy2440 Год назад

Congrats on using ISO date format.

@leyushi464 Год назад

Thank you so very much!! 😊 I hope I can have ph.D. of Bioinformatics, haha

@m.n.hthementor1992 Год назад

Wow! Nice, are you currently studying master these days?

@erikschannel6244 Год назад

Ever considered something like Roam Research or Logseq? I guess, it exactly does what you are doing, but offers a few more features for combining the journal part with the keeping-track-of-project part. Take a look and thank me later. ;)

@OMGenomics Год назад

No, I think the universality of Google docs makes it the simpler choice. Especially since I’m copying status updates into other shared documents often, it’s nice to have the formatting and everything just work the same. So I’m very happy with this setup. Of course you can value other things in your tools than I do :)

@JDNicoll Год назад

Sent an email this morning, in gmail, to a colleague about a gene study I’m launching. Then this video appears in my RU-vid suggestions. - just in case you were wondering how closely Google follows your communications.

@willkwan Год назад

Doing everything in cmd and copying commands into a markdown file is a good system. Meanwhile I’m clicking through GUI’s half the day and trying to remember what I clicked 🤔