Introduction to spatial sequencing data analysis 

Your videos have been particularly helpful and I sincerely hope that you will consider doing a full video on the project of single cell rna analysis, similar to reproducing the Bioinformatic diagrams of some of the articles, which could help people to really understand how to interpret the actual problem. I take the liberty of bothering you and sincerely hope that more and more people subscribe to your channel

Amazing video! Awaiting your video on SquidPy!

Would really love to see a video on 10x genomics Xenium data processing as an aspiring high school researcher!

Thanks for your time and effort.

Something which will be nice is an analysis between sections. Let’s say one spatial image before and after drug treatment

Hello! I am curious if you will have a much expanded version of the Spatial Seq Data analysis, also curious if there is any Proteomic analysis tutorial coming up! Thanks for your great work!

thank you, it is very useful

Can you make a video about spatial seq analysis on RStudio?

could you do a tutorial for geomx analysis

Thanks for the great video. Could you please tell me how to convert a spatial seurat object into a scanpy for an integrated seurat object (two images)? Also, how should I handle these images in scanpy?

Thank so much, I am performing Merfish (vizgen) analysis. Do you know when do we integrate all the samples toguether? Before normalization? after normalization of each sample but before PCA? thanksss

Great video! How to annotate the clusters or the cell types?

@Question: have done 10x spatial transcriptomics, and downstream analysis i try to use R, but the R generated UMAP (dim=30) is different from the UMAP that I se from the same data in the Loupe browser. I have played wtih the dim= 5, 10, 20, 30, still different? Any comment would be helpful. bthw: nice tutorial

@Sanbomics Have you tried with Spatial-seq data using stereopy It would be great to got through, if you have a tutorial.

Do you have a code for doing the same in R studio, I've been trying to built a Seurat object with public available data, using the counts, position and images, with no success. Thanks

Also can you make a video which you explain all the elements of a seurat object

Did you get an opportunity to do a follow up video where you demultipex each spot and use the squidpy package?