Sure, here are some papers and articles I found helpful: 1. www.ncbi.nlm.nih.gov/pmc/articles/PMC4059276/ 2. microbialinformaticsj.biomedcentral.com/articles/10.1186/2042-5783-2-3 3. bioinformaticsworkbook.org/dataAnalysis/Metagenomics/MetagenomicsP1.html#gsc.tab=0 4. scilicium.com/metagenomics-analysis-pipeline/
I am struggling to understand the pre-processing of rnaseq data...should i do it with python? R? command line? i think command line is it easy? what is the best pipeline? fastq-trimmomatric-star? the download of several files from the webpage directly with the command line, manipulate single vs paired ends... you really make excellent videos i do not know if you could talk about this, it would really help me, thanks a lot for all you teach us
