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Molecular Dynamics - chapter 1: Equations of Motion 

MoBioChem
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Derivation of Hamilton equations employed in molecular dynamics simulations.

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24 авг 2024

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Комментарии : 24   
@haroldocandaliurd
@haroldocandaliurd 4 года назад
Clear explanation! We need people like you.
@MoBioChem
@MoBioChem 4 года назад
Thanks! :)
@Omgtired
@Omgtired Год назад
Superb! really nice start for MD simulations!
@gouravchakraborty6196
@gouravchakraborty6196 3 года назад
Thank you very much for your videos...These videos are gem
@georgiosmikaelian6144
@georgiosmikaelian6144 4 года назад
Excellent video and very understandable. Well done!
@MoBioChem
@MoBioChem 4 года назад
Thank you very much for watching. I am happy that you liked it.
@nurrohmannurrohman1280
@nurrohmannurrohman1280 Год назад
amazing amazing! this is an easy transfer of knowledge and understanding
@user-wy4rx6fp8u
@user-wy4rx6fp8u 2 года назад
🥲Those equations brought tears to my eyes.
@shilpichowdhury5866
@shilpichowdhury5866 2 года назад
Useful video..very clear explanation.. Thank you so much.. Go ahead.. 🙏
@antoniowu1995
@antoniowu1995 3 года назад
Awesome video!!
@scribblesinbioinformatics6246
@scribblesinbioinformatics6246 4 года назад
Very good explaination.. keep up the good work. Looking forward to more videos from you.
@vipulkumar2726
@vipulkumar2726 4 года назад
Excellent 👌
@hashrafi7148
@hashrafi7148 4 года назад
Very clear explanation. Good Job man!!
@enderaraujo398
@enderaraujo398 4 года назад
Excellent!
@scribblesinbioinformatics6246
@scribblesinbioinformatics6246 3 года назад
Will you please let know what book have you referred to prepare this and next two videos?
@MoBioChem
@MoBioChem 3 года назад
In fact it is very hard to say a book because there is not an only book where everything is explained properly. These 3 lectures are a combination of general knowledge, many papers, tutorials of different MD programs and probably some books but I don't have a list of them. My favorite one is Computer simulation of liquids by MP Allen, DJ Tildesley, where you can find many of the most tricky parts of the talks such as the periodic boundary conditions and the Ewald summation. In addition, I like the following paper where you can find a lot of useful citations: www.livecomsjournal.org/article/5957-best-practices-for-foundations-in-molecular-simulations-article-v1-0
@md.gaziulislam9558
@md.gaziulislam9558 3 года назад
Could you please share with us how you produce such nice simulation pictures? Your videos are really awesome and tactical.
@MoBioChem
@MoBioChem 3 года назад
Thanks! We use the free software Visual Molecular Dynamics. It is very easy to use and they have nice tutorials. www.ks.uiuc.edu/Research/vmd/
@OmidSarbakhshian
@OmidSarbakhshian 2 месяца назад
is it possible to share your slides with us?
@happiness1546
@happiness1546 3 года назад
I actually struggle a lot to understand these topics, but your explanations are very clear!! Would it be possible to have the slides that you use in these videos? Thanks in advance :)
@MoBioChem
@MoBioChem 3 года назад
Please, contact us through our website mobiochem.com
@user-tm6ur7os6o
@user-tm6ur7os6o 3 года назад
Why vi = dqi/dt at 8:12?
@MoBioChem
@MoBioChem 3 года назад
This is the definition of velocity
@user-tm6ur7os6o
@user-tm6ur7os6o 3 года назад
@@MoBioChem Oh I was mistaken for the q as a charge. Thank you for your answer!
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