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Molecular Dynamics - chapter 2: Force Fields 

MoBioChem
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We explain the relevance of the potential energy and how to compute it with a force field in classical molecular dynamic simulations

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12 сен 2024

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Комментарии : 15   
@scribblesinbioinformatics6246
@scribblesinbioinformatics6246 4 года назад
Awesome my friend. You have added one more guy to your fan list. Waiting for next lecture.
@nayanikasarkar9253
@nayanikasarkar9253 3 года назад
Very well explained. Thank you so much!
@gol2573
@gol2573 4 года назад
Thanks for the good work. Would it be possible to show how to parameterise our force field in your next lectures? and also an introduction of the existing software for MD? Thanks a lot
@qaisarmaqbool3047
@qaisarmaqbool3047 2 года назад
Very nice work
@mjuliana100
@mjuliana100 3 года назад
I enjoyed the video. But how to use the potential energy equation in three dimensions? I would like to see a continuation of this video. I saw the chapter 3 but is other topic. Good job
@MoBioChem
@MoBioChem 3 года назад
That's a very good question. One can write down the relation between the gradient in internal coordinates and the gradient in Cartesian coordinates by using the chain rule. I will likely prepare a lecture about this in the future. Thanks for the suggestions!
@lookaway8496
@lookaway8496 4 года назад
Thank you so much, can you please post a video on using lammps for MD simulations?
@lookaway8496
@lookaway8496 4 года назад
@@MoBioChem Thank you so much. And please keep posting MD related videos more. Ill be looking forward.
@lamnguyenvan585
@lamnguyenvan585 3 года назад
Hello, I wanna ask you a question. Why potential enery in log.dummps file always negative? Thank you so much !
@MoBioChem
@MoBioChem 3 года назад
Sorry, I don't understand the question
@AhmedMahmoud-zi8lf
@AhmedMahmoud-zi8lf Год назад
could I have the presentation ?
@sambhajimasal4248
@sambhajimasal4248 3 года назад
hie sirr!! Can i get this presentation sir ???? It will be bigg help for me
@MoBioChem
@MoBioChem 3 года назад
I can send you a PDF if you provide your email
@reemalielghaish3607
@reemalielghaish3607 3 года назад
@@MoBioChem please can you send it to me p-raelghaish@zewailcity.edu.eg
@lamnguyenvan585
@lamnguyenvan585 3 года назад
@@MoBioChem, please can you send it to me. My email vanlamhust@gmail.com thanks a lot !!!
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