Movie Making from molecular dynamics simulation with VMD 

A very informative and concise tutorial, thank you so much for making it!

Hi.. I want movie of ligand protein complex how can I get this.?

Can I make video on VMD using all snapshots of pdb files? If it is possible, how to do it?

Gracias! me ayudó mucho para mi tesis

I have this issue when I followed your step, No VideoMach executable. Do you know what the reason for this is? Please help.

Hi, i am not able to set movie duration(in seconds). It is showing warning box that i cant change movie duration for TRajectory

Hi! Some time the enconder by mpeg should be changed to be viewed in quick time (mac player)

How to calculate mmpbsa with vmd. How to use CaFE plugin. Please clear my doubt.

Great! Video, which video quality-renderer is preferred while submitting to Journals

Hello sir, your video quite helped me in learning simulation, please help me out in simulating one protein with multiple ligands. is it possible with NAMD? If yes, please suggest a way. thanku.

Thank you for sharing ur knowledge with us. Do you know whether it is possible to export VMD files to other graphic software like Maya?

Hi Mohamed. Thanks so much for the video. Short, sweet and packed with information. Could you point us to tcl scripts for making a movie like this one programmatically? Thank you.

Such an informative video. Thank you very much for sharing it.

I need your help, please. How can l talk with you

Hi, Your video was extremely informative. I was able to make simulation videos for one of my targets. However, in case of my second target no MPEG1 output file is generated. It says that the movie generation is complete but i dont see any other related information that comes with completion like the no. Of frames being read or the time taken for completion etc. Can u plz help me out. Wud really appreciate it

How much ns is required for a good MD simulation movie?

Very helpful video. Thank you.

thanks bro, great video!

Showing this problem during MD_Run.namd Info: USING ARITHMETIC MEAN TO COMBINE L-J SIGMA PARAMETERS FATAL ERROR: UNKNOWN PARAMETER IN CHARMM PARAMETER FILE ./toppar_water_ions.str LINE=*set nat ?NATC* FATAL ERROR: UNKNOWN PARAMETER IN CHARMM PARAMETER FILE ./toppar_water_ions.str LINE=*set nat ?NATC*

thank you

Moore Edward Allen Angela Lee Jennifer