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Perform docking ONLINE in 5 MINUTES |CB-Dock |Cavity-detection Blind Docking |Easiest & best docking

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In this tutorial online server CB-Dock has been used to perform docking. you can easily perform docking in just 5 minutes. NO prior knowledge of programming is required. The molecular docking approach can be used to investigate interaction between a small molecule and a protein. Molecular docking is one of the most frequently used methods in structure-based drug design, due to its ability to predict the binding-conformation of small molecule ligands to the appropriate target binding site. Characterisation of the binding behaviour plays an important role in rational design of drugs as well as to elucidate fundamental biochemical processes.
#Docking #MolecularDocking #ProteinDocking #DrugDesigning # Protein-ligand docking
#Drug Discovery #Structure based Virtual Screening #Docking #ADME/T #DNA docking #drug #Virtual screening, ## Computer aided drug discovery.
• Structure-Based Drug D...
• Analysis of Docking re...
• Protein-Ligand Docking...

Опубликовано:

24 авг 2024

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Комментарии : 47

@syedrizwanshah3935 2 года назад

Thanks a lot for making this difficult task easy for me & everyone.

@MuzzammelRehman 2 года назад

Thank you

@mdataulislam496 2 года назад

Good to see you to help the scientific community.

@MuzzammelRehman 2 года назад

Thank you sir.

@inayatsaidi3872 2 года назад

Thank you very much sir. God bless you

@MuzzammelRehman 2 года назад

Thank you

@navgeetsandhu7029 2 года назад

Thankyou so much sir. Docking seems so easy

@MuzzammelRehman 2 года назад

You are most welcome

@cappamaampi2452 2 года назад

Think you for this good presentation

@MuzzammelRehman 2 года назад

So nice of you

@MuhammadFaizan-mi9yo 2 года назад

Appreciate sir. kindly make the next video on the IEBD database for epitope detection and all its aspects.

@kashafaltaf3462 2 года назад

Asalamu Alaikum sir, Your lectures and tutorials are amazing. i request you to make a separate tutorial on pharmacophore modeling using any online platform or any other tool which is free /trial licensed like ligandscout.

@greyfield6828 2 года назад

Brilliant presentation. thanks\

@MuzzammelRehman 2 года назад

Thank you dear and also share with others to promote free education

@fizachaudhary7049 2 года назад

fantastic

@MuzzammelRehman 2 года назад

Thank you

@susmitasahoo3743 2 года назад

This helped a lot in my thesis work. Thanks a lot. Please make a video on how to use to patchdock and firedock server.

@shamalasham102 7 месяцев назад

For the CB dock, it is necessary to perform energy minimization for ligand molecules before uploading the file.

@MuzzammelRehman 7 месяцев назад

@shamalasham102 6 месяцев назад

sir, can we use this CB docking for paper publication?

@MuzzammelRehman 6 месяцев назад

@@shamalasham102 yes

@shamalasham102 6 месяцев назад

thank you sir

@rahulnaga5010 2 года назад

That's a very nice presentation...sir can you please suggest me how it will use as a standalone...

@mohsinshad9844 2 года назад

Which is the best software / tool among all the docking software.

@elhadadsalaheddine6797 5 месяцев назад

Hello professor , thank you so much for you explanation, i wanna ask you if the pdb file of the complexe generated with cb dock can be submitted to MD simulation without any problems?

@prabirmondal8541 Год назад

Dear sir, how analysing the figure obtained from cd dock... Please give a supporting lecture ( video)..... Thank you

@kashafaltaf3462 2 года назад

Asalamu alium sir , want to now the best best latest chemical database to screen out the best leads? As I remember you have deliver one lecturer on it. please send me the details. than you

@MuzzammelRehman 2 года назад

You can use ZINC, Chemble , MCule, NCI , Asinex etc

@7-zoolmen7a11 2 года назад

How can we assess whether the link between a protein and a ligand is strong or not?

@MuzzammelRehman 2 года назад

For this you can perform Molecular Dynamics Simulation

@kashafaltaf3462 2 года назад

actually I forget that one .

@MuzzammelRehman 2 года назад

@vincentbeltran8267 Год назад

How to dock if the pdb file that is only available for the protein is in complex with a ligand? Do I need to remove that ligand from the structure before inputting it to CB-DOCK? If that is how it is done, how to do it?

@sanjeev1227 9 месяцев назад

May I know the protein for finding antianginal activity pls help sir

@fereshtehazimian8044 2 года назад

Thank for presentation. I just wanted to ask a problem. When iam using this docking program, it couldn't able to recognize my ligand. Can you give me suggestion? Thanks

@emanmaherabdelhamidmostafa6560 Год назад

Plz, what is the difference between autodock and cbdock? Are they the same using?

@ogunoluwamayowa4749 2 года назад

Great content as usual. Thank you. I have a question, do you think online docking is acceptable in International journals?

@MuzzammelRehman 2 года назад

Yes you can publish after validation

@vincentbeltran8267 Год назад

@@MuzzammelRehman How to do validation?

@soumitrashome1642 2 года назад

Thank you for the information. My receptor for analysis is greater than 3 MB and the server is not uploading it. Can you please suggest how to overcome this issue?