The Match->Align option is not available in my ChimeraX installed on windows system. Please suggest an alternative for percentage sequence identity. Thank you.
when we model a protein with Chimera with the option modeller, how to decide what model is better with the value zDOPE. If I have only positives values. What is the best? The highest number or the nearer to cero?
@@diptendusarkar1912 follow these steps. After matching two structures as it was done in video, you first go to "Select"-"Chain"-choose"D". Then "Select"-"Selection Mode"-"Append". Again, "Select"-"Chain"-"A"-"1mbo" At this juncture you have two ways to follow choose whichever you like: FIRST: After appending the 1mbo, you go to "Select"- "Invert (Selected Models)", and then "Actions"-"Ribbon" -"Hide" Second: "Select"-"name selection"- (a window appears! name it as you like. For example 1mbo-4hhb) hit ok. "Select"- "Invert (Selected Models)", and then "Actions"-"Ribbon" -"Hide" The advantage of the second method is that If you touch anywhere on the screen on chimera and loose your selection, this is guarantee way to bring your selection back. I hope, this explanation helps...
you can select the chains for instance for the first model #0 at the command line with 'select #0 :.A-C' and then name it with command "namesel 4hhb-ABC". Got this from link below. www.cgl.ucsf.edu/pipermail/chimera-users/2019-January/015384.html and the namesel command from the cheat sheet www.cgl.ucsf.edu/chimera/current/docs/UsersGuide/quickref.pdf
